PT  - JOURNAL ARTICLE
AU  - Maxwell R. Mumbach
AU  - Adam J. Rubin
AU  - Ryan A. Flynn
AU  - Chao Dai
AU  - Paul A. Khavari
AU  - William J. Greenleaf
AU  - Howard Y. Chang
TI  - HiChIP: Efficient and sensitive analysis of protein-directed genome architecture
AID  - 10.1101/073619
DP  - 2016 Jan 01
TA  - bioRxiv
PG  - 073619
4099  - http://biorxiv.org/content/early/2016/09/08/073619.short
4100  - http://biorxiv.org/content/early/2016/09/08/073619.full
AB  - Genome conformation is central to gene control but challenging to interrogate. Here we present HiChIP, a protein-centric chromatin conformation method. HiChIP improves the yield of conformation-informative reads by over 10-fold and lowers input requirement over 100-fold relative to ChIA-PET. HiChIP of cohesin reveals multi-scale genome architecture with greater signal to background than in situ Hi-C. Thus, HiChIP adds to the toolbox of 3D genome structure and regulation for diverse biomedical applications.