PT - JOURNAL ARTICLE AU - Rachid Ounit AU - Stefano Lonardi TI - Higher classification sensitivity of short metagenomic reads with CLARK-<em>S</em> AID - 10.1101/053462 DP - 2016 Jan 01 TA - bioRxiv PG - 053462 4099 - http://biorxiv.org/content/early/2016/08/13/053462.short 4100 - http://biorxiv.org/content/early/2016/08/13/053462.full AB - The growing number of metagenomic studies in medicine and environmental sciences is creating increasing demands on the computational infrastructure designed to analyze these very large datasets. Often, the construction of ultra-fast and precise taxonomic classifiers can compromise on their sensitivity (i.e., the number of reads correctly classified). Here we introduce CLARK-S, a new software tool that can classify short reads with high precision, high sensitivity and high speed at the same time.