RT Journal Article
SR Electronic
T1 Aligning sequence from molecular inversion probes
JF bioRxiv
FD Cold Spring Harbor Laboratory
SP 007260
DO 10.1101/007260
A1 Brent S. Pedersen
A1 Elissa Murphy
A1 Ivana V. Yang
A1 David A. Schwartz
YR 2014
UL http://biorxiv.org/content/early/2014/07/19/007260.abstract
AB Summary Molecular inversion probes (MIP’s) allow efficient enrichment of genomic regions of interest for the purpose of targeted sequencing. To date, there is a paucity of simple-to-use software to align sequences derived from this method. Here, we describe a single program that performs mapping, arm removal, and deduplication before outputting alignments in SAM format.Availability bwa-mips is available at https://github.com/brentp/bwa-mips under the MIT license.Contact bpederse{at}gmail.com