RT Journal Article SR Electronic T1 A clonally reproducing generalist aphid pest colonises diverse host plants by rapid transcriptional plasticity of duplicated gene clusters JF bioRxiv FD Cold Spring Harbor Laboratory SP 063610 DO 10.1101/063610 A1 Thomas C. Mathers A1 Yazhou Chen A1 Gemy Kaithakottil A1 Fabrice Legeai A1 Sam T. Mugford A1 Patrice Baa-Puyoulet A1 Anthony Bretaudeau A1 Bernardo Clavijo A1 Stefano Colella A1 Olivier Collin A1 Tamas Dalmay A1 Thomas Derrien A1 Honglin Feng A1 Toni Gabaldón A1 Anna Jordan A1 Irene Julca A1 Graeme J. Kettles A1 Krissana Kowitwanich A1 Dominique Lavenier A1 Paolo Lenzi A1 Sara Lopez-Gomollon A1 Damian Loska A1 Daniel Mapleson A1 Florian Mauster A1 Simon Moxon A1 Daniel R. G. Price A1 Akiko Sugio A1 Manuella van Munster A1 Marilyne Uzest A1 Darren Waite A1 Georg Jander A1 Denis Tagu A1 Alex C. C. Wilson A1 Cock van Oosterhout A1 David Swarbreck A1 Saskia A. Hogenhout YR 2016 UL http://biorxiv.org/content/early/2016/07/19/063610.abstract AB Background The prevailing paradigm of host-parasite evolution is that arms races lead to increasing specialisation via genetic adaptation. Insect herbivores are no exception, and the majority have evolved to colonise a small number of closely related host species. Remarkably, the green peach aphid, Myzus persicae, colonises plant species across 40 families and single M. persicae clonal lineages can colonise distantly related plants. This remarkable ability makes M. persicae a highly destructive pest of many important crop species.Results To investigate the exceptional phenotypic plasticity of M. persicae, we sequenced the M. persicae genome and assessed how one clonal lineage responds to host plant species of different families. We show that genetically identical individuals are able to colonise distantly related host species through the differential regulation of genes belonging to aphid-expanded gene families. Multigene clusters collectively up-regulate in single aphids within two days upon host switch. Furthermore, we demonstrate the functional significance of this rapid transcriptional change using RNA interference (RNAi)-mediated knock-down of genes belonging to the cathepsin B gene family. Knock-down of cathepsin B genes reduced aphid fitness, but only on the host that induced up-regulation of these genes.Conclusions Previous research has focused on the role of genetic adaptation of parasites to their hosts. Here we show that the generalist aphid pest M. persicae is able to colonise diverse host plant species in the absence of genetic specialisation. This is achieved through rapid transcriptional plasticity of genes that have duplicated during aphid evolution.