TY - JOUR T1 - CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community JF - bioRxiv DO - 10.1101/064451 SP - 064451 AU - Thomas R. Connor AU - Nicholas J. Loman AU - Simon Thompson AU - Andy Smith AU - Joel Southgate AU - Radoslaw Poplawski AU - Matthew J. Bull AU - Emily Richardson AU - Matthew Ismail AU - Simon Elwood-Thompson AU - Christine Kitchen AU - Martyn Guest AU - Marius Bakke AU - Sam K. Sheppard AU - Mark J. Pallen Y1 - 2016/01/01 UR - http://biorxiv.org/content/early/2016/07/19/064451.abstract N2 - The increasing availability and decreasing cost of high-throughput sequencing has transformed academic medical microbiology, delivering an explosion in available genomes while also driving advances in bioinformatics. However, many microbiologists are unable to exploit the resulting large genomics datasets because they do not have access to relevant computational resources and to an appropriate bioinformatics infrastructure. Here, we present the Cloud Infrastructure for Microbial Bioinformatics (CLIMB) facility, a shared computing infrastructure that has been designed from the ground up to provide an environment where microbiologists can share and reuse methods and data.DATA SUMMARY The paper describes a new, freely available public resource and therefore no data has been generated. The resource can be accessed at http://www.climb.ac.uk. Source code for software developed for the project can be found at http://github.com/MRC-CLIMB/I/We confirm all supporting data, code and protocols have been provided within the article or through supplementary data files.IMPACT STATEMENT Technological advances mean that genome sequencing is now relatively simple, quick, and affordable. However, handling large genome datasets remains a significant challenge for many microbiologists, with substantial requirements for computational resources and expertise in data storage and analysis. This has led to fragmentary approaches to software development and data sharing that reduce the reproducibility of research and limits opportunities for bioinformatics training. Here, we describe a nationwide electronic infrastructure that has been designed to support the UK microbiology community, providing simple mechanisms for accessing large, shared, computational resources designed to meet the bioinformatic needs of microbiologists. ER -