PT - JOURNAL ARTICLE AU - Milan Malinsky AU - Emiliano Trucchi AU - Daniel John Lawson AU - Daniel Falush TI - <kbd>RADpainter</kbd> and <kbd>fineRADstructure:</kbd> population inference from RADseq data AID - 10.1101/057711 DP - 2016 Jan 01 TA - bioRxiv PG - 057711 4099 - http://biorxiv.org/content/early/2016/06/07/057711.short 4100 - http://biorxiv.org/content/early/2016/06/07/057711.full AB - Powerful approaches to inferring recent or current population structure based on nearest neighbor haplotype ‘coancestry’ have so far been inaccessible to users without high quality genome-wide haplotypes. With a boom in non-model organism genomics, there is a pressing need to bring these approaches to communities without access to such data. Here we present RADpainter, a new program designed to infer the ‘coancestry’ matrix from restriction-site-associated DNA sequencing (RADseq) data. We combine this program together with a previously published MCMC clustering algorithm into fineRADstructure - a complete, easy to use, and fast population inference package for RADseq data (https://github.com/millanek/fineRADstructure).