TY - JOUR T1 - MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps JF - bioRxiv DO - 10.1101/034694 SP - 034694 AU - Bohdan B. Khomtchouk AU - James R. Hennessy AU - Vytas Dargis-Robinson AU - Claes Wahlestedt Y1 - 2016/01/01 UR - http://biorxiv.org/content/early/2016/05/30/034694.abstract N2 - We propose a user-friendly ChIP-seq and RNA-seq software suite for the interactive visualization and analysis of gene expression heatmaps, including integrated features to support: principal component analysis, differential expression analysis, gene ontology analysis, and dynamic network visualization of genes directly from a heatmap.MicroScope is hosted online as an R Shiny web application based on the D3 JavaScript library: http://microscopebioinformatics.org/. The methods are implemented in R, and are available as part of the MicroScope project at: https://github.com/Bohdan-Khomtchouk/Microscope.FDRfalse discovery rateGOgene ontologyUIuser interfacePCAprincipal component analysisDEdifferential expression ER -