PT - JOURNAL ARTICLE AU - Henry Pinkard AU - Nico Stuurman AU - Kaitlin Corbin AU - Ronald Vale AU - Matthew F. Krummel TI - Micro-Magellan: A flexible, open source acquisition software for high throughput biological light microscopy AID - 10.1101/038117 DP - 2016 Jan 01 TA - bioRxiv PG - 038117 4099 - http://biorxiv.org/content/early/2016/01/28/038117.short 4100 - http://biorxiv.org/content/early/2016/01/28/038117.full AB - We demonstrate the capabilities of μMagellan: a flexible, open source microscopy software for reproducible high throughput imaging of biological samples across heterogeneous scales of space and time. μMagellan provides a simple user interface for exploration and automated imaging of non-cuboidal regions. By utilizing the hardware abstraction layer of μMagellan, μMagellan provides a powerful and extensible platform for imaging heterogeneous biological samples on a wide range of existing microscopes.