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- February 18, 2017.
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- H.C. Metsky*,1,2,
- C.B. Matranga*,1,
- S. Wohl*,1,3,
- S.F. Schaner1,3,4,
- C.A. Freije1,3,
- S. M. Winnicki1,
- K. West1,
- J. Qu1,
- M.L. Baniecki1,
- A. Gladden-Young1,
- A.E. Lin1,3,
- C.H. Tomkins-Tinch1,
- D.J. Park1,
- C.Y. Luo1,3,
- K.G. Barnes1,3,
- B. Chak1,3,
- G. Barbosa-Lima5,
- E. Delatorre6,
- Y.R. Vieira5,
- L.M. Paul7,
- A.L. Tan7,
- M.C. Porcelli8,
- C. Vasquez8,
- A.C. Cannons9,
- M.R. Cone9,
- K.N. Hogan9,
- E.W. Kopp IV9,
- J.J. Anzinger10,
- K.F. Garcia11,
- L.A. Parham11,
- R.M. Gélvez Ramírez12,
- M.C. Miranda Montoya12,
- D.P. Rojas13,
- C.M. Brown14,
- S. Hennigan14,
- B. Sabina14,
- S. Scotland14,
- K. Gangavarapu15,
- N.D. Grubaugh15,
- G. Oliveira16,
- R. Robles-Sikisaka15,
- A. Rambaut17,18,
- L. Gehrke19,20,
- S. Smole14,
- M.E. Halloran21,22,
- L.A. Villar Centeno12,
- S. Mattar23,
- I. Lorenzana11,
- J. Cerbino-Neto5,
- W. Degrave24,
- P.T. Bozza25,
- A. Gnirke1,
- K.G. Andersen†,15,16,26,
- S. Isern7,
- S. Michael†,7,
- F. Bozza†,5,27,
- T.M.L. Souza¶,†,28,29,
- I. Bosch†,19,
- N.L. Yozwiak†,1,3,
- B.L. MacInnis¶,†,1,4 and
- P.C. Sabeti†,1,3,4
- 1Broad Institute of MIT and Harvard, Cambridge MA, USA
- 2Department of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge MA, USA
- 3Center for Systems Biology, Department of Organismic and Evolutionary Biology, Harvard University, Cambridge MA, USA
- 4Harvard T.H. Chan School of Public Health, Harvard University, Boston MA, USA
- 5National Institute of Infectious Diseases Evandro Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro RJ, Brazil
- 6Laboratório de AIDS e Imunologia Molecular, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro RJ, Brazil
- 7Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers FL, USA
- 8Miami-Dade County Mosquito Control, Miami FL, USA
- 9Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa FL, USA
- 10Department of Microbiology, The University of the West Indies, Mona, Kingston, Jamaica
- 11Instituto de Investigacion en Microbiologia (IIM) - Universidad Nacional Autónoma de Honduras, Honduras
- 12Grupo de Epidemiología Clínica, Universidad Industrial de Santander, Bucaramanga, Colombia
- 13Department of Epidemiology, College of Public Health and Health Professions, University of Florida, Gainesville FL, USA
- 14Massachusetts Department of Public Health, Jamaica Plain MA, USA
- 15Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla CA, USA
- 16Scripps Translational Science Institute, La Jolla CA, USA
- 17University of Edinburgh, Edinburgh EH9 3FL, UK
- 18Fogarty International Center, National Institutes of Health, Bethesda MD, USA
- 19Institute for Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge MA, USA
- 20Department of Microbiology and Immunobiology, Harvard Medical School, Boston MA, USA
- 21Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle WA, USA
- 22Department of Biostatistics, University of Washington, Seattle WA, USA
- 23Institute for Tropical Biology Research, Universidad de Córdoba, Colombia
- 24Fiocruz, Instituto Oswaldo Cruz, Laboratório de Genômica Funcional e Bioinformática, Rio de Janeiro RJ, Brazil
- 25Laboratório de Imunofarmacologia, Instituto Oswaldo Cruz (IOC), Fundação Oswaldo Cruz (FIOCRUZ), Rio de Janeiro RJ, Brazil
- 26Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla CA, USA
- 27D’Or Institute for Research and Education (IDOR), Brazil
- 28National Institute for Science and Technology on Innovation on Neglected Diseases (INCT/IDN), Fiocruz, Rio de Janeiro RJ, Brazil
- 29Center for Technological Development in Health (CDTS), Fiocruz, Rio de Janeiro RJ, Brazil
- ↵¶co-corresponding author: B.L.M. (bronwyn{at}broadinstitute.org); T.M.L.S. (tmoreno{at}cdts.fiocruz.br)