Article Information
History
- February 3, 2017.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under a CC-BY-NC-ND 4.0 International license.
Author Information
- Nathan D Grubaugh1*,
- Jason T Ladner2*,
- Moritz UG Kraemer3*,
- Gytis Dudas4*,
- Amanda L Tan5*,
- Karthik Gangavarapu1*,
- Michael R Wiley2*,
- Stephen White6*,
- Julien Thézé3*,
- Diogo M Magnani7,
- Karla Prieto2,
- Daniel Reyes2,
- Andrea Bingham8,
- Lauren M Paul5,
- Refugio Robles-Sikisaka1,
- Glenn Oliveira9,
- Darryl Pronty6,
- Hayden C Metsky10,
- Mary Lynn Baniecki10,
- Kayla G Barnes10,
- Bridget Chak10,
- Catherine A Freije10,
- Adrianne Gladden-Young10,
- Andreas Gnirke10,
- Cynthia Luo10,
- Bronwyn MacInnis10,
- Christian B Matranga10,
- Daniel J Park10,
- James Qu10,
- Stephen F Schaffner10,
- Christopher Tomkins-Tinch10,
- Kendra L West10,
- Sarah M Winnicki10,
- Shirlee Wohl10,
- Nathan L Yozwiak10,
- Joshua Quick11,
- Joseph R Fauver12,
- Kamran Khan13,14,
- Shannon E Brent13,
- Robert C Reiner Jr.15,
- Paola N Lichtenberger16,
- Michael Ricciardi7,
- Varian K Bailey7,
- David I Watkins7,
- Marshall R Cone17,
- Edgar W Kopp IV17,
- Kelly N Hogan17,
- Andrew C Cannons17,
- Reynald Jean18,
- Robert F Garry19,
- Nicholas J Loman11,
- Nuno R Faria3,
- Mario C Porcelli20,
- Chalmers Vasquez20,
- Elyse R Nagle2,
- Derek AT Cummings21,
- Danielle Stanek8,
- Andrew Rambaut22,23,
- Mariano Sanchez-Lockhart2,
- Pardis C Sabeti10#,
- Leah D Gillis6#,
- Scott F Michael5#,
- Trevor Bedford4#,
- Oliver G Pybus3#,
- Sharon Isern5#,
- Gustavo Palacios2#$ and
- Kristian G Andersen1,9,24#$
- 1Department of Immunology and Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA
- 2Center for Genome Sciences,U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, MD 21702, USA
- 3Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
- 44Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA
- 5Department of Biological Sciences, College of Arts and Sciences, Florida Gulf Coast University, Fort Myers, FL, 33965,USA
- 6Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Miami, FL, 33125,USA
- 7Department of Pathology, University of Miami Miller School of Medicine, Miami, FL, 33136, USA
- 8Bureau of Epidemiology, Division of Disease Control and Health Protection, Florida Department of Health, Tallahassee, FL, 32399, USA
- 9Scripps Translational Science Institute, La Jolla, CA 92037, USA
- 10The Broad Institute of MIT and Harvard, Cambridge, MA 02142,USA
- 11Institute of Microbiology and Infection, University of Birmingham, Birmingham B15 2TT, UK
- 12Department of Microbiology, Immunology, and Pathology, Colorado State University, Fort Collins, CO 80523, USA
- 13Li Ka Shing Knowledge Institute, St Michael´s Hospital, Toronto, ON M5B 1T8, Canada
- 14Division of Infectious Diseases, Department of Medicine, University of Toronto, Toronto, ON M5B 1T8, Canada
- 15Institute for Health Metrics and Evaluation, University of Washington, Seattle, WA 98121, USA
- 16Division of Infectious Diseases, University of Miami Miller School of Medicine, Miami, FL, 33155, USA
- 17Bureau of Public Health Laboratories, Division of Disease Control and Health Protection, Florida Department of Health, Tampa, FL, 33612, USA
- 18Florida Department of Health in Miami-Dade County, Miami, FL, 33125, USA
- 19Department of Microbiology and Immunology, Tulane University School of Medicine, New Orleans, LA 70112, USA
- 20Miami-Dade County Mosquito Control, Miami, FL, 33178 USA
- 21Department of Biology and Emerging Pathogens Institute, University of Florida, Gainesville, FL, 32610, USA
- 22Institute of Evolutionary Biology, University of Edinburgh, Edinburgh EH9 3FL, UK
- 23Fogarty International Center, National Institutes of Health, Bethesda, MD 20892, USA
- 24Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037, USA
- ↵$=co-corresponding; (andersen{at}scripps.edu); G.P. (gustavo.f.palacios.ctr{at}mail.mil).