New Results
SvABA: Genome-wide detection of structural variants and indels by local assembly
View ORCID ProfileJeremiah Wala, Pratiti Bandopadhayay, View ORCID ProfileNoah Greenwald, Ryan O’Rourke, Ted Sharpe, View ORCID ProfileChip Stewart, View ORCID ProfileSteve Schumacher, View ORCID ProfileYilong Li, View ORCID ProfileJoachim Weischenfeldt, View ORCID ProfileXiaotong Yao, Chad Nusbaum, Peter Campbell, View ORCID ProfileMatthew Meyerson, View ORCID ProfileCheng-Zhong Zhang, View ORCID ProfileMarcin Imielinski, View ORCID ProfileRameen Beroukhim
doi: https://doi.org/10.1101/105080
Jeremiah Wala
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
2Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
3Bioinformatics and Integrative Genomics, Harvard University, Cambridge, MA 02138, USA
Pratiti Bandopadhayay
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
2Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
Noah Greenwald
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
2Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
Ryan O’Rourke
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
2Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
Ted Sharpe
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
Chip Stewart
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
Steve Schumacher
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
2Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
Yilong Li
4Seven Bridges Genomics, Cambridge, MA 02142, USA
5Cancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA UK
Joachim Weischenfeldt
6The Finsen Laboratory, Rigshospitalet, University of Copenhagen, Copenhagen, Denmark
Xiaotong Yao
7Tri-Institutional PhD Program in Computational Biology and Medicine, New York, NY 10065, USA
8New York Genome Center, New York, NY 10013, USA
Chad Nusbaum
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
Peter Campbell
5Cancer Genome Project, Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA UK
9Department of Haematology, University of Cambridge, Hills Road, Cambridge CB2 2XY, UK
Matthew Meyerson
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
2Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
Cheng-Zhong Zhang
10Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, 44 Binney Street DA1410, Boston, MA 02115, USA
11Department of Biomedical Informatics, Harvard Medical School, 10 Shattuck Street 315B, Boston, MA 02115, USA
Marcin Imielinski
8New York Genome Center, New York, NY 10013, USA
12Department of Pathology and Laboratory Medicine, Englander Institute for Precision Medicine, Institute for Computational Biomedicine, and Meyer Cancer Center, Weill Cornell Medicine, New York, NY 10065, USA
Rameen Beroukhim
1The Broad Institute of Harvard and MIT, Cambridge, MA 02142, USA
2Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA
3Bioinformatics and Integrative Genomics, Harvard University, Cambridge, MA 02138, USA
Article usage
Posted February 01, 2017.
SvABA: Genome-wide detection of structural variants and indels by local assembly
Jeremiah Wala, Pratiti Bandopadhayay, Noah Greenwald, Ryan O’Rourke, Ted Sharpe, Chip Stewart, Steve Schumacher, Yilong Li, Joachim Weischenfeldt, Xiaotong Yao, Chad Nusbaum, Peter Campbell, Matthew Meyerson, Cheng-Zhong Zhang, Marcin Imielinski, Rameen Beroukhim
bioRxiv 105080; doi: https://doi.org/10.1101/105080
SvABA: Genome-wide detection of structural variants and indels by local assembly
Jeremiah Wala, Pratiti Bandopadhayay, Noah Greenwald, Ryan O’Rourke, Ted Sharpe, Chip Stewart, Steve Schumacher, Yilong Li, Joachim Weischenfeldt, Xiaotong Yao, Chad Nusbaum, Peter Campbell, Matthew Meyerson, Cheng-Zhong Zhang, Marcin Imielinski, Rameen Beroukhim
bioRxiv 105080; doi: https://doi.org/10.1101/105080
Subject Area
Subject Areas
- Biochemistry (11495)
- Bioengineering (8572)
- Bioinformatics (28733)
- Biophysics (14728)
- Cancer Biology (11852)
- Cell Biology (17064)
- Clinical Trials (138)
- Developmental Biology (9276)
- Ecology (13967)
- Epidemiology (2067)
- Evolutionary Biology (18069)
- Genetics (12109)
- Genomics (16556)
- Immunology (11658)
- Microbiology (27536)
- Molecular Biology (11326)
- Neuroscience (59855)
- Paleontology (446)
- Pathology (1839)
- Pharmacology and Toxicology (3169)
- Physiology (4854)
- Plant Biology (10223)
- Synthetic Biology (2827)
- Systems Biology (7271)
- Zoology (1607)