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- January 9, 2017.
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- Alexander Sczyrba1*,
- Peter Hofmann2,3*,
- Peter Belmann1,3*,
- David Koslicki4,
- Stefan Janssen3,6,
- Johannes Dröge2,3,
- Ivan Gregor2,3,9,
- Stephan Majda2,8,
- Jessika Fiedler2,3,
- Eik Dahms2,3,
- Andreas Bremges1,3,43,
- Adrian Fritz3,
- Ruben Garrido-Oter2,3,10,11,
- Tue Sparholt Jørgensen14,15,45,
- Nicole Shapiro5,
- Philip D. Blood7,
- Alexey Gurevich42,
- Yang Bai10,13,
- Dmitrij Turaev41,
- Matthew Z. DeMaere12,
- Rayan Chikhi20,21,
- Niranjan Nagarajan18,
- Christopher Quince16,
- Lars Hestbjerg Hansen14,
- Søren J. Sørensen15,
- Burton K. H. Chia18,
- Bertrand Denis18,
- Jeff L. Froula5,
- Zhong Wang5,
- Robert Egan5,
- Dongwan Don Kang5,
- Jeffrey J. Cook19,
- Charles Deltel22,23,
- Michael Beckstette17,
- Claire Lemaitre22,23,
- Pierre Peterlongo22,23,
- Guillaume Rizk23,24,
- Dominique Lavenier21,23,
- Yu-Wei Wu25,44,
- Steven W. Singer25,26,
- Chirag Jain27,
- Marc Strous28,
- Heiner Klingenberg29,
- Peter Meinicke29,
- Michael Barton5,
- Thomas Lingner30,
- Hsin-Hung Lin31,
- Yu-Chieh Liao31,
- Genivaldo Gueiros Z. Silva32,
- Daniel A. Cuevas32,
- Robert A. Edwards32,
- Surya Saha33,
- Vitor C. Piro34,35,
- Bernhard Y. Renard34,
- Mihai Pop36,
- Hans-Peter Klenk37,
- Markus Göker38,
- Nikos Kyrpides5,39,
- Tanja Woyke5,
- Julia A. Vorholt40,
- Paul Schulze-Lefert10,11,
- Edward M. Rubin5,
- Aaron E. Darling12,
- Thomas Rattei41 and
- Alice C. McHardy2,3,11
- 1Faculty of Technology and Center for Biotechnology, Bielefeld University, Bielefeld, 33594 Germany
- 2Formerly Department for Algorithmic Bioinformatics, Heinrich Heine University, Duesseldorf, 40225 Germany
- 3Department for Computational Biology of Infection Research, Helmholtz Centre for Infection Research, and Braunschweig Integrated Centre of Systems Biology, Braunschweig, 38124 and 38106 Germany
- 4Mathematics Department, Oregon State University, Corvallis, OR, 97331 USA
- 5Department of Energy, Joint Genome Institute, Walnut Creek, CA, 94598 USA
- 6Departments of Pediatrics and Computer Science and Engineering, University of California, San Diego, CA, 92093 USA
- 7Pittsburgh Supercomputing Center, Pittsburgh, PA, 15213 USA
- 8Department of Biology, University of Duisburg and Essen, Essen, 45141 Germany
- 9Max-Planck Research Group for Computational Genomics and Epidemiology, Max-Planck Institute for Informatics, Saarbruecken, 66123 Germany
- 10Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, 50829 Germany
- 11Cluster of Excellence on Plant Sciences
- 12The ithree institute, University of Technology of Sydney, Sydney, NSW, 2007 Australia
- 13Current address: Centre of Excellence for Plant and Microbial Sciences (CEPAMS) and State Key Laboratory of Plant Genomics, Institute of Genetics and Developmental Biology, Chinese Academy of Science & John Innes Centre, Beijing, 100101, China
- 14Department of Environmental Science - Environmental microbiology and biotechnology, Aarhus University, Roskilde, 4000 Denmark
- 15Section of Microbiology, University of Copenhagen, Copenhagen, 2100 Denmark
- 16Department of Microbiology and Infection, Warwick Medical School, University of Warwick, Coventry, CV4 7AL United Kingdom
- 17Department of Molecular Infection Biology, Helmholtz Centre for Infection Research, Braunschweig, 38124 Germany
- 18Department of Computational and Systems Biology, Genome Institute of Singapore, 138672 Singapore
- 19Intel Corporation, Hillsboro, OR, 97124 USA
- 20Department of Computer Science, Research Center in Computer Science (CRIStAL), Signal and Automatic Control of Lille, Lille, 59655 France
- 21National Centre of the Scientific Research (CNRS), Rennes, 35042 France
- 22National Institute of Research in Informatics and Automatics (INRIA), Rennes, 35042 France
- 23Institute of Research in Informatics and Random Systems (IRISA), Rennes, 35042 France
- 24Algorizk - IT consulting and software systems, Paris, 75013 France
- 25Joint BioEnergy Institute, Emeryville, CA, 94608 USA
- 26Biological Systems and Engineering Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720 USA
- 27Max Planck Institute for Biology of Ageing, Cologne, 50931 Germany
- 28Energy Engineering and Geomicrobiology, University of Calgary, Calgary, AB T2N 1N4 Canada
- 29Department of Bioinformatics, Institute for Microbiology and Genetics, University of Goettingen, Goettingen, 37077 Germany
- 30Microarray and Deep Sequencing Core Facility, University Medical Center, Goettingen, 37077 Germany
- 31Institute of Population Health Sciences, National Health Research Institutes, Miaoli County, 35053 Taiwan
- 32San Diego State University, San Diego, CA, 92182 USA
- 33Boyce Thompson Institute for Plant Research, New York, 14853 USA
- 34Research Group Bioinformatics, Robert Koch Institute, Berlin, 13353 Germany
- 35CAPES Foundation, Ministry of Education of Brazil, Brasília, 70040 Brazil
- 36Center for Bioinformatics and Computational Biology and Department of Computer Science, University of Maryland, College Park, MD 20742 USA
- 37School of Biology, Newcastle University, Newcastle upon Tyne, NE1 7RU United Kingdom
- 38Leibniz Institute DSMZ – German Collection of Microorganisms and Cell Cultures, Braunschweig, 38124 Germany
- 39Department of Biological Sciences, King Abdulaziz University, Jeddah, 21589 Saudi Arabia
- 40Swiss Federal Institute of Technology (ETH Zurich), Institute of Microbiology, Zurich, 8093 Switzerland
- 41Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, 1090 Austria
- 42Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia, 199034
- 43German Center for Infection Research (DZIF), partner site Hannover-Braunschweig, 38124 Braunschweig, Germany
- 44Graduate Institute of Biomedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan
- 45Department of Science and Environment, Roskilde University, Roskilde, 4000 Denmark
- alice.mchardy{at}helmholtz-hzi.de, asczyrba{at}cebitec.uni-bielefeld.de
↵* Contributed equally