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Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
Florian Schmidt, Nina Gasparoni, Gilles Gasparoni, Kathrin Gianmoena, Cristina Cadenas, Julia K. Polansky, Peter Ebert, Karl Nordström, Matthias Barann, Anupam Sinha, Sebastian Fröhler, Jieyi Xiong, Azim Dehghani Amirabad, Fatemeh Behjati Ardakani, Barbara Hutter, Gideon Zipprich, Bärbel Felder, Jürgen Eils, Benedikt Brors, Wei Chen, Jan G. Hengstler, Alf Hamann, Thomas Lengauer, Philip Rosenstiel, Jörn Walter, Marcel H. Schulz
doi: https://doi.org/10.1101/081935
Florian Schmidt
1Cluster of Excellence for Multimodal Computing and Interaction, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
2Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
Nina Gasparoni
3Department of Genetics, University of Saarland, Saarbrücken, Germany.
Gilles Gasparoni
3Department of Genetics, University of Saarland, Saarbrücken, Germany.
Kathrin Gianmoena
4Leibniz Research Centre for Working Environment and Human Factors IfADo, Ardeystrasse 67, Dortmund, 44139, Germany.
Cristina Cadenas
4Leibniz Research Centre for Working Environment and Human Factors IfADo, Ardeystrasse 67, Dortmund, 44139, Germany.
Julia K. Polansky
5Experimental Rheumatology, German Rheumatism Research Centre, Berlin, Germany.
Peter Ebert
2Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
6International Max Planck Research School for Computer Science, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
Karl Nordström
3Department of Genetics, University of Saarland, Saarbrücken, Germany.
Matthias Barann
7Institute of Clinical Molecular Biology, Christian-Albrechts-University, Kiel, Germany.
Anupam Sinha
7Institute of Clinical Molecular Biology, Christian-Albrechts-University, Kiel, Germany.
Sebastian Fröhler
8Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, Germany.
Jieyi Xiong
8Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, Germany.
Azim Dehghani Amirabad
1Cluster of Excellence for Multimodal Computing and Interaction, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
2Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
6International Max Planck Research School for Computer Science, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
Fatemeh Behjati Ardakani
1Cluster of Excellence for Multimodal Computing and Interaction, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
2Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
Barbara Hutter
9Applied Bioinformatics, Deutsches Krebsforschungszentrum, Heidelberg, Germany.
Gideon Zipprich
10Data Management and Genomics IT, Deutsches Krebsforschungszentrum, Heidelberg, Germany.
Bärbel Felder
10Data Management and Genomics IT, Deutsches Krebsforschungszentrum, Heidelberg, Germany.
Jürgen Eils
10Data Management and Genomics IT, Deutsches Krebsforschungszentrum, Heidelberg, Germany.
Benedikt Brors
9Applied Bioinformatics, Deutsches Krebsforschungszentrum, Heidelberg, Germany.
Wei Chen
8Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, Germany.
Jan G. Hengstler
4Leibniz Research Centre for Working Environment and Human Factors IfADo, Ardeystrasse 67, Dortmund, 44139, Germany.
Alf Hamann
6International Max Planck Research School for Computer Science, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
Thomas Lengauer
2Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
Philip Rosenstiel
7Institute of Clinical Molecular Biology, Christian-Albrechts-University, Kiel, Germany.
Jörn Walter
3Department of Genetics, University of Saarland, Saarbrücken, Germany.
Marcel H. Schulz
1Cluster of Excellence for Multimodal Computing and Interaction, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
2Computational Biology & Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, Saarbrücken, 66123, Germany.
Article usage
Posted October 19, 2016.
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
Florian Schmidt, Nina Gasparoni, Gilles Gasparoni, Kathrin Gianmoena, Cristina Cadenas, Julia K. Polansky, Peter Ebert, Karl Nordström, Matthias Barann, Anupam Sinha, Sebastian Fröhler, Jieyi Xiong, Azim Dehghani Amirabad, Fatemeh Behjati Ardakani, Barbara Hutter, Gideon Zipprich, Bärbel Felder, Jürgen Eils, Benedikt Brors, Wei Chen, Jan G. Hengstler, Alf Hamann, Thomas Lengauer, Philip Rosenstiel, Jörn Walter, Marcel H. Schulz
bioRxiv 081935; doi: https://doi.org/10.1101/081935
Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
Florian Schmidt, Nina Gasparoni, Gilles Gasparoni, Kathrin Gianmoena, Cristina Cadenas, Julia K. Polansky, Peter Ebert, Karl Nordström, Matthias Barann, Anupam Sinha, Sebastian Fröhler, Jieyi Xiong, Azim Dehghani Amirabad, Fatemeh Behjati Ardakani, Barbara Hutter, Gideon Zipprich, Bärbel Felder, Jürgen Eils, Benedikt Brors, Wei Chen, Jan G. Hengstler, Alf Hamann, Thomas Lengauer, Philip Rosenstiel, Jörn Walter, Marcel H. Schulz
bioRxiv 081935; doi: https://doi.org/10.1101/081935
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