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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Valerie A. Schneider, Tina Graves-Lindsay, Kerstin Howe, Nathan Bouk, Hsiu-Chuan Chen, Paul A. Kitts, Terence D. Murphy, Kim D. Pruitt, Françoise Thibaud-Nissen, Derek Albracht, Robert S. Fulton, Milinn Kremitzki, Vince Magrini, Chris Markovic, Sean McGrath, Karyn Meltz Steinberg, Kate Auger, Will Chow, Joanna Collins, Glenn Harden, Tim Hubbard, Sarah Pelan, Jared T. Simpson, Glen Threadgold, James Torrance, Jonathan Wood, Laura Clarke, Sergey Koren, Matthew Boitano, Heng Li, Chen-Shan Chin, Adam M. Phillippy, Richard Durbin, Richard K. Wilson, Paul Flicek, Deanna M. Church
doi: https://doi.org/10.1101/072116
Valerie A. Schneider
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Tina Graves-Lindsay
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Kerstin Howe
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Nathan Bouk
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Hsiu-Chuan Chen
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Paul A. Kitts
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Terence D. Murphy
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Kim D. Pruitt
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Françoise Thibaud-Nissen
1National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA
Derek Albracht
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Robert S. Fulton
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Milinn Kremitzki
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Vince Magrini
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Chris Markovic
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Sean McGrath
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Karyn Meltz Steinberg
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Kate Auger
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Will Chow
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Joanna Collins
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Glenn Harden
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Tim Hubbard
4Queen Mary University of London, London, UK
Sarah Pelan
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Jared T. Simpson
5Ontario Institute for Cancer Research, Toronto, Ontario, Canada & Department of Computer Science, University of Toronto, Toronto, Ontario, Canada
Glen Threadgold
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
James Torrance
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Jonathan Wood
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Laura Clarke
6European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Sergey Koren
7National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Matthew Boitano
8Pacific Biosciences, Menlo Park, CA 94025, USA
Heng Li
9Broad Institute, Cambridge, MA 02142, USA
Chen-Shan Chin
8Pacific Biosciences, Menlo Park, CA 94025, USA
Adam M. Phillippy
7National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA
Richard Durbin
3Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK
Richard K. Wilson
2McDonnell Genome Institute at Washington University, St. Louis, MO 63018, USA
Paul Flicek
6European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK
Deanna M. Church
1010X Genomics, Pleasanton, CA 94566, USA
Article usage
Posted August 29, 2016.
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Valerie A. Schneider, Tina Graves-Lindsay, Kerstin Howe, Nathan Bouk, Hsiu-Chuan Chen, Paul A. Kitts, Terence D. Murphy, Kim D. Pruitt, Françoise Thibaud-Nissen, Derek Albracht, Robert S. Fulton, Milinn Kremitzki, Vince Magrini, Chris Markovic, Sean McGrath, Karyn Meltz Steinberg, Kate Auger, Will Chow, Joanna Collins, Glenn Harden, Tim Hubbard, Sarah Pelan, Jared T. Simpson, Glen Threadgold, James Torrance, Jonathan Wood, Laura Clarke, Sergey Koren, Matthew Boitano, Heng Li, Chen-Shan Chin, Adam M. Phillippy, Richard Durbin, Richard K. Wilson, Paul Flicek, Deanna M. Church
bioRxiv 072116; doi: https://doi.org/10.1101/072116
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly
Valerie A. Schneider, Tina Graves-Lindsay, Kerstin Howe, Nathan Bouk, Hsiu-Chuan Chen, Paul A. Kitts, Terence D. Murphy, Kim D. Pruitt, Françoise Thibaud-Nissen, Derek Albracht, Robert S. Fulton, Milinn Kremitzki, Vince Magrini, Chris Markovic, Sean McGrath, Karyn Meltz Steinberg, Kate Auger, Will Chow, Joanna Collins, Glenn Harden, Tim Hubbard, Sarah Pelan, Jared T. Simpson, Glen Threadgold, James Torrance, Jonathan Wood, Laura Clarke, Sergey Koren, Matthew Boitano, Heng Li, Chen-Shan Chin, Adam M. Phillippy, Richard Durbin, Richard K. Wilson, Paul Flicek, Deanna M. Church
bioRxiv 072116; doi: https://doi.org/10.1101/072116
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