Article Information
History
- August 25, 2016.
Article Versions
- Version 1 (March 12, 2016 - 21:00).
- Version 2 (March 29, 2016 - 11:38).
- You are viewing Version 3, the most recent version of this article.
Copyright
The copyright holder for this preprint is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. All rights reserved. No reuse allowed without permission.
Author Information
- The Computational Pan-Genomics Consortium*,
- Tobias Marschall1,2,
- Manja Marz3,4,5,6,
- Thomas Abeel7,
- Louis Dijkstra9,10,
- Bas E. Dutilh11,12,13,
- Ali Ghaffaari1,2,
- Paul Kersey14,
- Wigard P. Kloosterman15,
- Veli Mäkinen16,
- Adam M. Novak17,
- Benedict Paten17,
- David Porubsky18,
- Eric Rivals19,20,
- Can Alkan21,
- Jasmijn Baaijens22,
- Paul I. W. De Bakker15,
- Valentina Boeva23,24,25,26,
- Raoul J. P. Bonnal8,
- Francesca Chiaromonte27,
- Rayan Chikhi28,
- Francesca D. Ciccarelli29,
- Robin Cijvat30,
- Erwin Datema31,
- Cornelia M. Van Duijn32,
- Evan E. Eichler33,34,
- Corinna Ernst35,
- Eleazar Eskin36,37,
- Erik Garrison38,
- Mohammed El-Kebir22,39,40,
- Gunnar W. Klau22,
- Jan O. Korbel14,41,
- Eric-Wubbo Lameijer42,
- Benjamin Langmead43,
- Marcel Martin44,
- Paul Medvedev45,46,47,
- John C. Mu48,
- Pieter Neerincx42,
- Klaasjan Ouwens49,50,
- Pierre Peterlongo51,
- Nadia Pisanti52,53,
- Sven Rahmann35,
- Ben Raphael40,
- Knut Reinert54,
- Dick de Ridder55,
- Jeroen de Ridder7,
- Matthias Schlesner56,
- Ole Schulz-Trieglaff57,
- Ashley D. Sanders58,
- Siavash Sheikhizadeh55,
- Carl Shneider59,
- Sandra Smit55,
- Daniel Valenzuela16,
- Jiayin Wang60,61,62,
- Lodewyk Wessels63,
- Ying Zhang30,22,
- Victor Guryev18,15,
- Fabio Vandin64,40,
- Kai Ye65,66,62 and
- Alexander Schönhuth22
- 1Center for Bioinformatics, Saarland University, Saarbrücken, Germany
- 2Max Planck Institute for Informatics, Saarbrücken, Germany
- 3Bioinformatics and High Throughput Analysis, Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, Leutragraben 1, 07743 Jena, Germany
- 4FLI Leibniz Institute for Age Research, Beutenbergstraße 11, 07745 Jena, Germany
- 5Michael Stifel Center Jena, Ernst-Abbe-Platz 2, 07743 Jena, Germany
- 6German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig
- 7The Delft Bioinformatics Lab, Department of Intelligent Systems, Delft University of Technology, Mekelweg 4, 2628 CD, Delft, The Netherlands
- 8Istituto Nazionale Genetica Molecolare INGM, ‘Romeo ed Enrica Invernizzi’, Milan 20122, Italy.
- 9Computational Science Lab, University of Amsterdam, Amsterdam, 1098XG, The Netherlands
- 10Department of High Performance Computing, ITMO University, Saint Petersburg, 197101, Russia
- 11Radboud Institute for Molecular Life Sciences, Center for Molecular and Biomolecular Informatics, Radboud University Medical Center, Nijmegen, Netherlands
- 12Theoretical Biology and Bioinformatics, Utrecht University, Utrecht, Netherlands
- 13Department of Marine Biology, Institute of Biology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil
- 14EMBL-European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK
- 15Department of Genetics, Center for Molecular Medicine, University Medical Center Utrecht, 3584 CG, Utrecht, The Netherlands
- 16HIIT and Department of Computer Science, University of Helsinki, Finland
- 17Genomics Institute, University of California Santa Cruz, Santa Cruz, CA 95064, USA
- 18European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Antonius Deusinglaan 1, AV Groningen 9713, The Netherlands
- 19LIRMM, CNRS and Université de Montpellier, Montpellier, France
- 20Institut de Biologie Computationnelle, CNRS and Université de Montpellier, Montpellier, France
- 21Department of Computer Engineering, Bilkent University, Bilkent, Ankara, 06800, Turkey
- 22Life Sciences Group, Centrum Wiskunde & Informatica, Amsterdam, 1098XG, The Netherlands
- 23Institut Curie, Centre de Recherche, Inserm U900, F-75005 Paris, France
- 24Mines ParisTech, F-77305 cedex Fontainebleau, France
- 25PSL Research University, F-75005 Paris, France
- 26Institut Cochin, Inserm U1016, CNRS UMR 8104, Université Paris Descartes UMR-S1016, F-75014 Paris, France
- 27Departments of Statistics, The Pennsylvania State University, University Park, PA, 16802
- 28CNRS, Univ. Lille, UMR 9189 CRIStAL, F-59000 Lille, France
- 29Division of Cancer Studies, King’s College London, London SE11UL, UK
- 30MonetDB Solutions, Amsterdam, The Netherlands
- 31KeyGene N.V, Agro Business Park 90, 6708 PW Wageningen, The Netherlands
- 32Department of Epidemiology, Erasmus Medical Center, Rotterdam, The Netherlands
- 33Department of Genome Sciences, University of Washington, Seattle, WA, 98195, USA
- 34Howard Hughes Medical Institute, University of Washington, Seattle, WA, 98195, USA
- 35Genome Informatics, Institute of Human Genetics, University Hospital Essen, University of Duisburg-Essen, Essen, Germany
- 36Department of Computer Science, University of California, Los Angeles, USA
- 37Department of Human Genetics, University of California, Los Angeles, USA
- 38Wellcome Trust Sanger Institute, Cambridge, UK
- 39Centre for Integrative Bioinformatics VU (IBIVU), VU University Amsterdam, De Boelelaan 1081A, 1081 HV Amsterdam, The Netherlands
- 40Center for Computational Molecular Biology and Department of Computer Science, Brown University, Providence, RI 02912, USA
- 41European Molecular Biology Laboratory (EMBL), Genome Biology Unit, Meyerhofstrasse 1, 69117 Heidelberg, Germany
- 42Genomics Coordination Center, University of Groningen, University Medical Center Groningen, Groningen, 9700RB, The Netherlands
- 43Department of Computer Science and Center for Computational Biology, Johns Hopkins University, Baltimore, Maryland
- 44Science for Life Laboratory, Dept. of Biochemistry and Biophysics, Stockholm University, Box 1031, SE-17121 Solna, Sweden
- 45Department of Computer Science and Engineering, The Pennsylvania State University, USA
- 46Department of Biochemistry and Molecular Biology, The Pennsylvania State University, USA
- 47Genomic Sciences Institute of the Huck, The Pennsylvania State University, USA
- 48Bina Technologies, Roche Sequencing, Redwood City, CA 94065, USA
- 49Biological Psychology, Vrije Universiteit Amsterdam, The Netherlands
- 50Genalice BV, Harderwijk, The Netherlands
- 51INRIA Campus de Beaulieu-Rennes, Rennes Cedex 35042, France
- 52Dipartimento di Informatica, University degli Studi di Pisa, Pisa, Italy
- 53Erable Team, INRIA
- 54Department of Mathematics and Computer Science, Freie Universität Berlin, Berlin, Germany
- 55Bioinformatics Group, Wageningen University, Droevendaalsesteeg 1, 6708 PB, Wageningen, The Netherlands
- 56Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 280, 69120 Heidelberg, Germany
- 57Illumina Cambridge Ltd, Chesterford Research Park, Little Chesterford, Essex CB10 1XL, UK
- 58Terry Fox Laboratory, BC Cancer Agency, Vancouver, British Columbia, Canada
- 59Leiden Observatory, Leiden University, P.O. Box 9513, 2300 RA Leiden, The Netherlands
- 60School of Management, Xi’an Jiaotong University, Xi’an, Shaanxi 710049, China
- 61Institute of Data Science and Information Quality, Xi’an Jiaotong University
- 62Shaanxi Engineering Research Center of Medical and Health Big Data, Xi’an Jiaotong University
- 63Netherlands Cancer Institute (NKI), Amsterdam, The Netherlands
- 64Department of Mathematics and Computer Science, University of Southern Denmark, Campusvej 55, DK-5230, Odense M, Denmark
- 65School of Electronic and Information Engineering, Xi’an Jiaotong University, Xi’an, Shaanxi 710049, China
- 66Kai Ye Young Scientist Studio, Xi’an Jiaotong University