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A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes
Tyler S. Alioto, Sophia Derdak, Timothy A. Beck, Paul C. Boutros, Lawrence Bower, Ivo Buchhalter, Matthew D. Eldridge, Nicholas J Harding, Lawrence E. Heisler, Eivind Hovig, David T. W. Jones, Andrew G. Lynch, Sigve Nakken, Paolo Ribeca, Anne-Sophie Sertier, Jared T. Simpson, Paul Spellman, Patrick Tarpey, Laurie Tonon, Daniel Vodák, Takafumi N. Yamaguchi, Sergi Beltran Agullo, Marc Dabad, Robert E. Denroche, Philip Ginsbach, Simon C. Heath, Emanuele Raineri, Charlotte L. Anderson, Benedikt Brors, Ruben Drews, Roland Eils, Akihiro Fujimoto, Francesc Castro Giner, Minghui He, Pablo Hennings-Yeomans, Barbara Hutter, Natalie Jäger, Rolf Kabbe, Cyriac Kandoth, Semin Lee, Louis Létourneau, Singer Ma, Hidewaki Nakagawa, Nagarajan Paramasivam, Anne-Marie Patch, Myron Peto, Matthias Schlesner, Sahil Seth, David Torrents, David A. Wheeler, Liu Xi, John Zhang, Daniela S. Gerhard, Víctor Quesada, Rafael Valdés-Mas, View ORCID ProfileMarta Gut, Thomas J. Hudson, John D. McPherson, Xose S. Puente, Ivo G. Gut
doi: https://doi.org/10.1101/012997
Tyler S. Alioto
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Sophia Derdak
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Timothy A. Beck
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
Paul C. Boutros
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
24Department of Medical Biophysics, University of Toronto, Toronto, Canada
Lawrence Bower
5Cancer Research UK Cambridge Institute, University of Cambridge, Heidelberg, Germany;
Ivo Buchhalter
4Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Matthew D. Eldridge
5Cancer Research UK Cambridge Institute, University of Cambridge, Heidelberg, Germany;
Nicholas J Harding
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
Lawrence E. Heisler
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
Eivind Hovig
9Norwegian Cancer Genomics Consortium, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway;
28Department of Tumor Biology, Oslo University Hospital, Oslo, Norway
29Department of Informatics, University of Oslo, Oslo, Norway
David T. W. Jones
3Division of Pediatric Neurooncology, German Cancer Research Center (DKFZ), Heidelberg, Germany
Andrew G. Lynch
5Cancer Research UK Cambridge Institute, University of Cambridge, Heidelberg, Germany;
Sigve Nakken
9Norwegian Cancer Genomics Consortium, Institute for Cancer Research, Oslo University Hospital, Oslo, Norway;
28Department of Tumor Biology, Oslo University Hospital, Oslo, Norway
Paolo Ribeca
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Anne-Sophie Sertier
7Synergie Lyon Cancer Foundation, Lyon, France
Jared T. Simpson
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
Paul Spellman
17Knight Cancer Institute, Oregon Health & Science University, Portland, OR, USAUSA
Patrick Tarpey
19Cancer Genome Project, Wellcome Trust Sanger Institute, Hinxton, United Kingdom
Laurie Tonon
7Synergie Lyon Cancer Foundation, Lyon, France
Daniel Vodák
27The bioinformatics core facility, Institute for Cancer Genetics and Informatics, Oslo University Hospital, Oslo, Norway
28Department of Tumor Biology, Oslo University Hospital, Oslo, Norway
Takafumi N. Yamaguchi
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
Sergi Beltran Agullo
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Marc Dabad
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Robert E. Denroche
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
Philip Ginsbach
4Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Simon C. Heath
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Emanuele Raineri
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Charlotte L. Anderson
6Victorian Life Sciences Computation Initiative, The University of Melbourne, Melbourne, Australia
Benedikt Brors
30Division of Applied Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Ruben Drews
4Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Roland Eils
4Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Akihiro Fujimoto
8RIKEN Center for Integrative Medical Sciences, Tokyo, Japan
Francesc Castro Giner
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Minghui He
20BGI-Shenzhen, Shenzhen 518083, China
Pablo Hennings-Yeomans
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
Barbara Hutter
30Division of Applied Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Natalie Jäger
4Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
15Stanford University, Department of Genetics, Stanford, CA, USA
Rolf Kabbe
4Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Cyriac Kandoth
21The Genome Institute, Washington University, St Louis, MO, USA
Semin Lee
22Harvard Medical School, Boston, MA, USA
Louis Létourneau
12McGill University, Montreal, Quebec, Canada
Singer Ma
14DNAnexus, Mountain View, CA, USA
Hidewaki Nakagawa
8RIKEN Center for Integrative Medical Sciences, Tokyo, Japan
Nagarajan Paramasivam
4Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Anne-Marie Patch
18Queensland Centre for Medical Genomics, Institute for Molecular Bioscience, University of Queensland, St Lucia, Brisbane, QLD, Australia
Myron Peto
17Knight Cancer Institute, Oregon Health & Science University, Portland, OR, USAUSA
Matthias Schlesner
4Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany
Sahil Seth
23MD Anderson Cancer Center, Houston, TX, USA
David Torrents
16IRB-BSC Joint Research Program on Computational Biology, Barcelona Supercomputing Center, Barcelona, Spain
David A. Wheeler
13Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
Liu Xi
13Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA
John Zhang
22Harvard Medical School, Boston, MA, USA
23MD Anderson Cancer Center, Houston, TX, USA
Daniela S. Gerhard
10National Cancer Institute, Bethesda, MD, USA
Víctor Quesada
11Universidad de Oviedo – IUOPA, Oviedo, Spain
Rafael Valdés-Mas
11Universidad de Oviedo – IUOPA, Oviedo, Spain
Marta Gut
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Thomas J. Hudson
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
24Department of Medical Biophysics, University of Toronto, Toronto, Canada
25Department of Molecular Genetics, University of Toronto, Toronto, Canada
John D. McPherson
2Ontario Institute for Cancer Research (OICR), Toronto, Canada;
24Department of Medical Biophysics, University of Toronto, Toronto, Canada
Xose S. Puente
11Universidad de Oviedo – IUOPA, Oviedo, Spain
Ivo G. Gut
1Centro Nacional de Análisis Genómico (CNAG), Barcelona, Spain;
Article usage
Posted December 24, 2014.
A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes
Tyler S. Alioto, Sophia Derdak, Timothy A. Beck, Paul C. Boutros, Lawrence Bower, Ivo Buchhalter, Matthew D. Eldridge, Nicholas J Harding, Lawrence E. Heisler, Eivind Hovig, David T. W. Jones, Andrew G. Lynch, Sigve Nakken, Paolo Ribeca, Anne-Sophie Sertier, Jared T. Simpson, Paul Spellman, Patrick Tarpey, Laurie Tonon, Daniel Vodák, Takafumi N. Yamaguchi, Sergi Beltran Agullo, Marc Dabad, Robert E. Denroche, Philip Ginsbach, Simon C. Heath, Emanuele Raineri, Charlotte L. Anderson, Benedikt Brors, Ruben Drews, Roland Eils, Akihiro Fujimoto, Francesc Castro Giner, Minghui He, Pablo Hennings-Yeomans, Barbara Hutter, Natalie Jäger, Rolf Kabbe, Cyriac Kandoth, Semin Lee, Louis Létourneau, Singer Ma, Hidewaki Nakagawa, Nagarajan Paramasivam, Anne-Marie Patch, Myron Peto, Matthias Schlesner, Sahil Seth, David Torrents, David A. Wheeler, Liu Xi, John Zhang, Daniela S. Gerhard, Víctor Quesada, Rafael Valdés-Mas, Marta Gut, Thomas J. Hudson, John D. McPherson, Xose S. Puente, Ivo G. Gut
bioRxiv 012997; doi: https://doi.org/10.1101/012997
A Comprehensive Assessment of Somatic Mutation Calling in Cancer Genomes
Tyler S. Alioto, Sophia Derdak, Timothy A. Beck, Paul C. Boutros, Lawrence Bower, Ivo Buchhalter, Matthew D. Eldridge, Nicholas J Harding, Lawrence E. Heisler, Eivind Hovig, David T. W. Jones, Andrew G. Lynch, Sigve Nakken, Paolo Ribeca, Anne-Sophie Sertier, Jared T. Simpson, Paul Spellman, Patrick Tarpey, Laurie Tonon, Daniel Vodák, Takafumi N. Yamaguchi, Sergi Beltran Agullo, Marc Dabad, Robert E. Denroche, Philip Ginsbach, Simon C. Heath, Emanuele Raineri, Charlotte L. Anderson, Benedikt Brors, Ruben Drews, Roland Eils, Akihiro Fujimoto, Francesc Castro Giner, Minghui He, Pablo Hennings-Yeomans, Barbara Hutter, Natalie Jäger, Rolf Kabbe, Cyriac Kandoth, Semin Lee, Louis Létourneau, Singer Ma, Hidewaki Nakagawa, Nagarajan Paramasivam, Anne-Marie Patch, Myron Peto, Matthias Schlesner, Sahil Seth, David Torrents, David A. Wheeler, Liu Xi, John Zhang, Daniela S. Gerhard, Víctor Quesada, Rafael Valdés-Mas, Marta Gut, Thomas J. Hudson, John D. McPherson, Xose S. Puente, Ivo G. Gut
bioRxiv 012997; doi: https://doi.org/10.1101/012997
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