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Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space
Richard Wilton, Tamas Budavari, Ben Langmead, Sarah Wheelan, Steven L. Salzberg, Alex Szalay
doi: https://doi.org/10.1101/007641
Richard Wilton
1Department of Physics and Astronomy, Johns Hopkins University, Baltimore, Maryland 21218, USA
Tamas Budavari
1Department of Physics and Astronomy, Johns Hopkins University, Baltimore, Maryland 21218, USA
Ben Langmead
2Department of Computer Science, Johns Hopkins University, Baltimore, Maryland 21218, USA
Sarah Wheelan
3Center for Computational Genomics, Johns Hopkins University, Baltimore, Maryland 21218, USA
Steven L. Salzberg
4McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University, Baltimore, Maryland 21205, USA
Alex Szalay
1Department of Physics and Astronomy, Johns Hopkins University, Baltimore, Maryland 21218, USA
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Posted August 01, 2014.
Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space
Richard Wilton, Tamas Budavari, Ben Langmead, Sarah Wheelan, Steven L. Salzberg, Alex Szalay
bioRxiv 007641; doi: https://doi.org/10.1101/007641
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